Windows installation -

[mah533]

" ... Windows A Windows binary is available here. Please extract to the bin/ folder, and you should be all set. ... " sorry but where exactly this "bin" folder should be? please provide a bit more "absolute" address.

If it helps, I am trying to install and run https: /berenslab/rna-seq-tsne.

in the demo.py, tsne_default = fast_tsne(X, seed=42) is called, which in turn the subprocess.call(os.path.dirname(os.path.realpath(__file__)) + "/bin/fast_tsne", ... is called. So I need the exact location of the "bin" folder.

where the FIt-SNE folder should be located? does its relative location to rna-seq-tsne folder matter?

regards

[mah533]

Resolved!

If anybody else faced the same issue, (as also stated in the README file of FIt-SNE):

• copy FIt-SNE folder anywhere
• make sure you put the its right address in the sys.path.append() in the demo.py file,
• download FItSNE.exe and libfftw3-3.dll from here and copy both of them into the "bin" folder within the FIt-SNE folder you copied earlier
• In fast_tsne.py file, change os.path.dirname(os.path.realpath(__file__)) + "/bin/fast_tsne.py" to os.path.dirname(os.path.realpath(__file__)) + "/FItSNE.exe"

hope it helps. It's all in the README file. thanks Dr. Kobak! regards