Closed fra-pcmgf closed 1 month ago
Numpy 2 has some breaking changes (https://numpy.org/devdocs/numpy_2_0_migration_guide.html), so GeneTrajectory-python should be updated and rebuilt to work with it.
It looks doable but we depend on packages that are not numpy 2 ready yet:
The current situation is
Also, I noticed we should require numpy>=1.25 instead because we are using np.linalg.eigh as named tuple.
numpy>=1.25
Note: this package supports numpy 2.0 but scanpy doesn't yet
Numpy 2 has some breaking changes (https://numpy.org/devdocs/numpy_2_0_migration_guide.html), so GeneTrajectory-python should be updated and rebuilt to work with it.
It looks doable but we depend on packages that are not numpy 2 ready yet: