Closed fra-pcmgf closed 5 months ago
It can be run from a Jupyter notebook, e.g. tutorial_human_myeloid.ipynb
from gene_trajectory.widgets.extract_gene_trajectory_widget import ExtractGeneTrajectoryWidget extract_gene_trajectory_widget = ExtractGeneTrajectoryWidget(gene_embedding, gene_dist_mat, genes, k=5) extract_gene_trajectory_widget
once optimized, you can extract the gene trajectories as extract_gene_trajectory_widget.gene_trajectory or the other parameters as e.g. extract_gene_trajectory_widget.t_list
extract_gene_trajectory_widget.gene_trajectory
extract_gene_trajectory_widget.t_list
It can be run from a Jupyter notebook, e.g. tutorial_human_myeloid.ipynb
once optimized, you can extract the gene trajectories as
extract_gene_trajectory_widget.gene_trajectoryor the other parameters as e.g.extract_gene_trajectory_widget.t_list