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KlugerLab / GeneTrajectory

R implementation of GeneTrajectory
https://www.nature.com/articles/s41587-024-02186-3
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python virtual environment created successfully function call problem #15

Open Angle28 opened 1 week ago

Angle28 commented 1 week ago

Hello, I would like to ask you, after the virtual environment is successfully created, what is the Error of reticulate::use_virtualenv('gene_trajectory')? Error in python_config_impl(python): Error 1 occurred running /share/home/bgi_idbmarx/.virtualenvs/gene_trajectory/bin/python: Resource temporarily unavailable Traceback:

1.reticulate::use_virtualenv("gene_trajectory") 2.use_python(python, required = required) 3.python_config(python) 4.python_config_impl(python) 5.stop("Error ", status, " occurred running ", python, ": ", errmsg)

fra-pcmgf commented 6 days ago

Hi @Angle28,

It seems to be an issue with reticulate, but I am not sure about what is causing it. Can you try recreating the virtual environment? If it doesn't work, can you post the steps you are doing to create the environment, python version and OS you are using?

Angle28 commented 6 days ago

Hello, I re-created the environment, but I still can't. I operate in jopyterLab. The python version I use is 3.9.12, the version of reticulate package is 1.25, and the version of GeneTrajectory package is 1.0.0