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Kmer-File-Format / kff-tools

GNU Affero General Public License v3.0
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Compilation error #14

Closed pashadag closed 1 year ago

pashadag commented 1 year ago

I'm trying to compile and get the following error. We're going to upgrade the OS in a few days so if you think its something related to my system setup, then just ignore this. Hopefully it will resolve after the new OS>

:build$ cmake .. && make -j 4
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Configuring done (3.1s)
-- Generating done (0.0s)
-- Build files have been written to: /home/pzm11/research/software/kff-tools/build
[  2%] Building CXX object kff-cpp-api/CMakeFiles/kff.dir/kff_io.cpp.o
[  5%] Linking CXX static library libkff.a
[  5%] Built target kff
[  8%] Building CXX object kff-cpp-api/CMakeFiles/kff_example.dir/main.cpp.o
[ 11%] Building CXX object kff-cpp-api/benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o
[ 14%] Building CXX object src/utils/CMakeFiles/kffutils.dir/sequences.cpp.o
[ 17%] Building CXX object src/utils/CMakeFiles/kffutils.dir/encoding.cpp.o
In file included from /home/pzm11/research/software/kff-tools/src/utils/encoding.cpp:2:0:
/home/pzm11/research/software/kff-tools/src/utils/sequences.hpp:10:10: fatal error: kff_io.hpp: No such file or directory
 #include "kff_io.hpp"
          ^~~~~~~~~~~~
compilation terminated.
yoann-dufresne commented 1 year ago

The CMake problem has been fixed