Add additional prometheus loggers & Grafana

[ThomasThelen]

The PR adds support for monitoring

• ElasticSearch

• NGINX

• FastAPI (the de-referencing API)

• Prometheus

• The OS that the stack is deployed on

• It also adds a Grafana dashboard for easy monitoring of services

• It also removes phuzzy.link. Fixes to the sparql endpoint will be later

• Added a few links for accepting local certs in the nginx readme

• Quality of life improvements for deploying

  • Standardizing docker-compose format
  • Important environmental variables are all in one place now
  • More readme additions on deploying to different environments
  • Container naming changes

• Architecture diagram updated