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Knowledge-Graph-Hub / kg-covid-19

An instance of KG Hub to produce a knowledge graph for COVID-19 response.
https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki
BSD 3-Clause "New" or "Revised" License
80 stars 26 forks source link

UniProtKB viral and host proteins #112

Open realmarcin opened 4 years ago

realmarcin commented 4 years ago

not sure if there is a better source https://www.covid19dataportal.org/proteins?db=uniprot-covid19#search-content

Name of the dataset A clear and concise description of the dataset and where you can download it from.

Mapping or relevant fields A clear and concise description of what which fields you would want to be ingested.

If possible, highlight which fields map to nodes and which fields map to edges. Refer to Data Preparation for guidelines on how the final transformed data should be represented.

Additional context Add any other context, requests, concerns.

justaddcoffee commented 4 years ago

A note on this dataset: Birgit from IntAct says that they sync/exchange data regularly with Uniprot, so we might already have some of these data

cmungall commented 4 years ago

we have a separate ticket about the GO gpi/gpa

nlharris commented 4 years ago

This is missing "A clear and concise description of what which fields you would want to be ingested. If possible, highlight which fields map to nodes and which fields map to edges." Also, needs info about how ingesting this data source would benefit kg-covid-19.