Knowledge-Graph-Hub / kg-covid-19

An instance of KG Hub to produce a knowledge graph for COVID-19 response.
https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki
BSD 3-Clause "New" or "Revised" License
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ingest viral gene expression response signatures from Harmonizome #321

Open realmarcin opened 4 years ago

realmarcin commented 4 years ago

Name of the dataset https://amp.pharm.mssm.edu/Harmonizome/dataset/GEO+Signatures+of+Differentially+Expressed+Genes+for+Diseases

18516 genes 233 disease perturbations 139800 gene-disease perturbation associations

Mapping or relevant fields A clear and concise description of what which fields you would want to be ingested.

If possible, highlight which fields map to nodes and which fields map to edges. Refer to Data Preparation for guidelines on how the final transformed data should be represented.

Additional context Add any other context, requests, concerns.