Closed justaddcoffee closed 3 years ago
I'm going to try and fix this here then merge into add_versioning branch/PR
Looking at this error message
org.openrdf.rio.RDFParseException: Not a valid (absolute) URI: xrefs [line 4]
It looks like this step is failing because there is some URI(s) in our nt that is not absolute and needs the default namespace to be defined, similar to this SO issue: https://stackoverflow.com/questions/7248931/openrdf-turtleparser-not-handling-prefixes-properly
@deepakunni3 do you recall if KGX defines a default namespace when converting KGX TSV to RDF? i.e. something up top in the NT file like:
@prefix : <http://default.org/> .
Probably fixed now, testing this here
Describe the bug
Failing currently at this stage:
export JAVA_OPTS=-Xmx128G && ./target/universal/stage/bin/blazegraph-runner load --informat=ntriples --journal=../merged-kg.jnl --use-ontology-graph=true ../data/merged/merged-kg.nt (self time 19s)
To Reproduce
run full pipeline on this commit 9fd270e1b141487ee422d138cd74add87118f669
Expected behavior
blazegraph-runner stage should complete
Version
9fd270e1b141487ee422d138cd74add87118f669