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Knowledge-Graph-Hub / kg-covid-19

An instance of KG Hub to produce a knowledge graph for COVID-19 response.
https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki
BSD 3-Clause "New" or "Revised" License
79 stars 26 forks source link

Consider moving curated GPI file to our data repo #371

Open justaddcoffee opened 4 years ago

justaddcoffee commented 4 years ago

Right now the curated GPI file for SARS-CoV-2 proteins and cleavage products lives here: https://github.com/Knowledge-Graph-Hub/kg-covid-19/tree/master/curated/ORFs

We should consider moving this here to this repo for data we ingest: https://github.com/Knowledge-Graph-Hub/kg-covid-19-data

This would be a step toward in getting our "frozen" data in one place. If possible, we could do this before the manuscript is published, since we mention this GPI file and its URL in our paper

cmungall commented 4 years ago

will need coordinate with GO as noctua-entity-ontology picks up from here cc @kltm

note we do need to refactor the code that makes neo. There should be a standalone gpi->kgx/rdf module. go can reuse this. cc @deepakunni3