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Knowledge-Graph-Hub / kg-idg

A Knowledge Graph to Illuminate the Druggable Genome
https://knowledge-graph-hub.github.io/kg-idg/
BSD 3-Clause "New" or "Revised" License
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ATC ingest emits empty nodes/edges file #105

Closed justaddcoffee closed 2 years ago

justaddcoffee commented 2 years ago

Describe the bug

It looks as though ATC ingest emits empty nodes/edges file in the most recent build

To Reproduce

See here for example: https://kg-hub.berkeleybop.io/kg-idg/20220722/transformed/atc/index.html Steps to reproduce the behavior.

Expected behavior

Should emit nodes and edges files that aren't empty

Version

This problem is present in 20220722, but not in 20220701 for example - possibly a new bug?

https://kg-hub.berkeleybop.io/kg-idg/20220701/transformed/atc/index.html

Additional context

I just happened upon this because we are thinking about using KG-IDG for a investigation into topological biases and graph ML

caufieldjh commented 2 years ago

Good catch, thanks. Suspect it's an issue with retrieval from Bioportal.

caufieldjh commented 2 years ago

Not fixed by #110