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Knowledge-Graph-Hub / kg-idg

A Knowledge Graph to Illuminate the Druggable Genome
https://knowledge-graph-hub.github.io/kg-idg/
BSD 3-Clause "New" or "Revised" License
9 stars 2 forks source link

Merge fails due to missing files #127

Closed caufieldjh closed 1 year ago

caufieldjh commented 1 year ago

Describe the bug

At the end of the merge phase:

[2023-05-01T18:35:01.117Z] [KGX][cli_utils.py][               merge] INFO: Merged graph has 556024 nodes and 4424908 edges
[2023-05-01T18:37:07.360Z] [KGX][cli_utils.py][               merge] INFO: Writing merged graph to merged-kg-tsv
[Pipeline] sh
[2023-05-01T19:20:14.477Z] + cp merged_graph_stats.yaml merged_graph_stats_20230501.yaml
[Pipeline] sh
[2023-05-01T19:20:14.879Z] + mv merged_graph_stats_20230501.yaml pos_valid_edges.tsv neg_train_edges.tsv neg_valid_edges.tsv data/merged/
[2023-05-01T19:20:14.879Z] mv: cannot stat 'pos_valid_edges.tsv': No such file or directory
[2023-05-01T19:20:14.879Z] mv: cannot stat 'neg_train_edges.tsv': No such file or directory
[2023-05-01T19:20:14.879Z] mv: cannot stat 'neg_valid_edges.tsv': No such file or directory

This causes the build to break.

Remove the lines involving training and validation sets from the Jenkinsfile.