A Knowledge Graph to Illuminate the Druggable Genome
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change nodes and edges file back to "merged-kg_nodes|edges.tsv" (instead of KG-IDG_nodes) #36
Closed
justaddcoffee closed 2 years ago
Describe the bug
In order for Ensmallen to find the graph data correctly, the graphs need to have a base filename of "merged-kg" instead of "KG-IDG").
Example: in this directory https://kg-hub.berkeleybop.io/kg-idg/current/ The KGX TSV tar.gz has these files inside of it: KG-IDG_edges.tsv KG-IDG_nodes.tsv
These should be: merged-kg_edges.tsv merged-kg_nodes.tsv
I think this should be a matter of just changing this line the merge.yaml
Also we need to change KGX TSV tar.gz's in the existing builds: https://kg-hub.berkeleybop.io/kg-idg/ To conform to this.
Version
Which version of KG-IDG are you seeing the bug with? An md5 hash is most useful.
9ceba6325c79a42837ef8c22070f2a0b4d5e8a74
TODO: