DrugCentral and TCRD ingests and transforms from MySQL dumps

Knowledge-Graph-Hub / kg-idg

A Knowledge Graph to Illuminate the Druggable Genome

https://knowledge-graph-hub.github.io/kg-idg/

BSD 3-Clause "New" or "Revised" License

9 stars 2 forks source link

Closed caufieldjh closed 2 years ago

caufieldjh commented 2 years ago

Next up:

[x] Set up Koza source config for TCRD selective SQL transform
[x] Move SQL dump transform function to its own script
[x] Set up SQL dump transform for DrugCentral
[x] Set up Koza source config for DrugCentral selective SQL transform
[x] Add unit tests for SQL parsing/transforms
[x] Ingest ATC ontology from https://bioportal.bioontology.org/ontologies/ATC
[x] Set up Jenkinsfile (and corresponding Docker image) with necessary DB platforms

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