A few lingering transform errors - Githubissues

Knowledge-Graph-Hub / kg-obo

A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub

https://knowledge-graph-hub.github.io/kg-obo/getting_started.html

GNU General Public License v3.0

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A few lingering transform errors #70

Closed justaddcoffee closed 3 years ago

justaddcoffee commented 3 years ago

Describe the bug

Looks like there are 165 transformed ontologies (which is great!), but there are still a few lingering transforms with problems:

[x] foodon
[x] envo
[x] ogi
[x] tgma
[x] mamo
[X] ico
[x] iceo
[x] ms
[x] vario
[x] fobi
[x] xlmod
[x] ohpi
[x] kisao
[x] vr
[x] ohmi

To Reproduce

See links above

Expected behavior

Ontology transforms should either have links to version/[ontology name].tar.gz or not appear in index.html

Version

11133da07b8c123fc09f432a95e92491aef176af

Additional context

These are sort of long tail of problematic ontologies, but they aren't needed for our main use case, kg-idg

caufieldjh commented 3 years ago

Also missing:

[x] cvdo
[x] fideo

caufieldjh commented 3 years ago

All of these OBOs are now either uploaded as transforms or fail to transform and are not uploaded.