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Knowledge-Graph-Hub / kg-phenio

A Graph for experiments doing ML on ontologies.
BSD 3-Clause "New" or "Revised" License
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Pass synonym and xref from obojson to node tsv #104

Closed kevinschaper closed 1 year ago

kevinschaper commented 1 year ago

This changes up kgx to run in non-streaming mode so that additional properties are included when converting from obojson to tsv, and then uses synonym & xref (if populated) in the koza transform.

addresses issue #79 and #90

caufieldjh commented 1 year ago

Thanks @kevinschaper - I'm going to keep an eye on the KG build as there's a nonzero chance that switching to non-streaming may cause it to mysteriously hang, but I'm very glad you figured out the scenario in which those other properties make it through the transform.

caufieldjh commented 1 year ago

Honestly I'm not really sure how a couple of those tests were passing. They're fairly out of date at this point and that wasn't helping the issues you were seeing.

caufieldjh commented 1 year ago

Build works - new kg-phenio (https://kg-hub.berkeleybop.io/kg-phenio/20230623/) should have synonym + xref