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KnowledgeCaptureAndDiscovery / DISK-API

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wings.disk.isi.edu does not have python #60

Closed hvarg closed 1 year ago

hvarg commented 1 year ago

wings.disk.isi.edu seems not to have python

+ python
/opt/wings/storage/default/users/admin/Enigma/code/library/AddDemographicMergeAndFilter/run: line 39: python: command not found

https://wings.disk.isi.edu/wings-portal/users/admin/Enigma/executions

May be related, but cannot mount a docker volume either:

$ ls /tmp/tmp.qde66OFZxu
AddDemographicMergeAndFilter.py
inputFiles
$ docker run -v /tmp/tmp.qde66OFZxu:/out --rm python-pandas python3 /out/AddDemographicMergeAndFilter.py out/inputFiles 
python3: can't open file '/out/AddDemographicMergeAndFilter.py': [Errno 2] No such file or directory
mosoriob commented 1 year ago

The wings instance is running on a docker container.

The volume must be:

docker run \
    -v --rm \
    -v wings_neurodisk_wings_data:/opt/wings mosorio/bikes_rent \
    python script.py \
        --inputs $INPUTS1 \
        --pi_value $OUTPUTS1 \
        --summary $OUTPUTS2 \
        --variables $PARAMS1 $PARAMS2 $PARAMS3
checkExitCode