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KnowledgeCaptureAndDiscovery / DISK-API

Apache License 2.0
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Run bindings are incorrect #95

Open mosoriob opened 1 year ago

mosoriob commented 1 year ago

Describe the bug

For inputs files, the value of disk:hasVariable is not correct

Explanation

The workflowBinding B64b50793d8a09cb64612a8e632255acf has Input and Output files and Parameters.

<http://localhost:8080/disk-server/admin/tlois/TriggeredLOI-usPnQQPLbwyn> <http://disk-project.org/ontology/disk#hasMetaWorkflowBinding> _:B64b50793d8a09cb64612a8e632255acf <http://localhost:8080/disk-server/admin/tlois> .
_:B64b50793d8a09cb64612a8e632255acf <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://disk-project.org/ontology/disk#WorkflowBinding> <http://localhost:8080/disk-server/admin/tlois> .
_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasInputFile> _:Bccd0f5177bb0cd8bc5bb13c88c7d21a1 <http://localhost:8080/disk-server/admin/tlois> .

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasOutputFile> _:B61b99757d2f4724f847483e815914204 <http://localhost:8080/disk-server/admin/tlois> .

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasVariableBinding> _:B159cf9f6a8323ecd4942c17594e29a8d <http://localhost:8080/disk-server/admin/tlois> .

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasWorkflow> <http://localhost:8080/wings-portal/export/users/admin/Enigma/workflows/Meta-Regression.owl#Meta-Regression> <http://localhost:8080/disk-server/admin/tlois> .
_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasId> "http://localhost:8080/wings-portal/export/users/admin/Enigma/executions/Meta-Regression--15dd0f95-df86-459c-9f31-a00f02cb5971.owl#Meta-Regression--15dd0f95-df86-459c-9f31-a00f02cb5971" <http://localhost:8080/disk-server/admin/tlois> .

For a parameter, I can know that the variable is Meta-Regression.owl#snp and the value is rs1080066

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasVariableBinding> _:Bbf8865371f617d3f7629272c5596fa05 <http://localhost:8080/disk-server/admin/tlois> .
_:Bbf8865371f617d3f7629272c5596fa05 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://disk-project.org/ontology/disk#VariableBinding> <http://localhost:8080/disk-server/admin/tlois> .
_:Bbf8865371f617d3f7629272c5596fa05 <http://disk-project.org/ontology/disk#hasVariable> <https://wings.disk.isi.edu/wings-portal/export/users/admin/Enigma/workflows/Meta-Regression.owl#snp> <http://localhost:8080/disk-server/admin/tlois> .
_:Bbf8865371f617d3f7629272c5596fa05 <http://disk-project.org/ontology/disk#hasBindingValue> "rs1080066" <http://localhost:8080/disk-server/admin/tlois> . y

For outputs, I can know that the variable is Meta-Regression.owl#p_value and the value is the File

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasOutputFile> _:B61b99757d2f4724f847483e815914204 <http://localhost:8080/disk-server/admin/tlois> .
_:B61b99757d2f4724f847483e815914204 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://disk-project.org/ontology/disk#VariableBinding> <http://localhost:8080/disk-server/admin/tlois> .
_:B61b99757d2f4724f847483e815914204 <http://disk-project.org/ontology/disk#hasVariable> <https://wings.disk.isi.edu/wings-portal/export/users/admin/Enigma/workflows/Meta-Regression.owl#p_value> <http://localhost:8080/disk-server/admin/tlois> .
_:B61b99757d2f4724f847483e815914204 <http://disk-project.org/ontology/disk#hasBindingValue> "http://localhost:8080/wings-portal/export/users/admin/Enigma/data/library.owl#p_value-44xpfxxah0thrybpnw6j57brq" <http://localhost:8080/disk-server/admin/tlois> .

For inputs, the information is not correct. 

_:B64b50793d8a09cb64612a8e632255acf <http://disk-project.org/ontology/disk#hasInputFile> _:B352108b879c91780bab684ff1e87dbf7 <http://localhost:8080/disk-server/admin/tlois> .
_:B352108b879c91780bab684ff1e87dbf7 <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://disk-project.org/ontology/disk#VariableBinding> <http://localhost:8080/disk-server/admin/tlois> .
_:B352108b879c91780bab684ff1e87dbf7 <http://disk-project.org/ontology/disk#hasVariable> <https://wings.disk.isi.edu/wings-portal/export/users/admin/Enigma/workflows/Meta-Regression.owl#SHA4aa5c5_BETULA_Significant_GWAS.csv> <http://localhost:8080/disk-server/admin/tlois> .
_:B352108b879c91780bab684ff1e87dbf7 <http://disk-project.org/ontology/disk#hasBindingValue> "http://localhost:8080/wings-portal/export/users/admin/Enigma/data/library.owl#SHA4aa5c5_BETULA_Significant_GWAS.csv" <http://localhost:8080/disk-server/admin/tlois> .