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KnowledgeCaptureAndDiscovery / DISK-legacy

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Knowledge base does not work properly #41

Closed dgarijo closed 4 years ago

dgarijo commented 4 years ago

"Data" looks like this: image

Hypothesis is: image

LOI is: image

However, the hypothesis is never triggered. It looks like there is a problem with the KB, because I have tried other hypothesis removing the individuals in Data and they are still triggered.

IKCAP commented 4 years ago

As of now, I don't think the assertions in the Data tab are used if we are using the wiki triple store as data store. Is this something that is desired ?

On Fri, 12 Jun, 2020, 2:47 am Daniel Garijo, notifications@github.com wrote:

"Data" looks like this: [image: image] https://user-images.githubusercontent.com/1520666/84439886-e5400b80-abed-11ea-8678-fb277ed2e41d.png

Hypothesis is: [image: image] https://user-images.githubusercontent.com/1520666/84439915-f557eb00-abed-11ea-8f9c-60eb63102953.png

LOI is: [image: image] https://user-images.githubusercontent.com/1520666/84439972-13bde680-abee-11ea-9435-0932c36efc0e.png

However, the hypothesis is never triggered. It looks like there is a problem with the KB, because I have tried other hypothesis removing the individuals in Data and they are still triggered.

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dgarijo commented 4 years ago

Yes, because the wiki is only for retrieving datasets. In order to describe new hypothesis we need the data tab; otherwise we need to add individuals in the ontology every time, which is very inconvenient.

Actually, I have another hypothesis that was defined using individuals from the data tab, and keeps triggering image

That :EffectSize... is an individual, which I created through the Data tab. Now that individual got erased, I don't know by whom, but things keep working on DISK. Same thing with :APOE4. It is not clear where all these things are declared, to be honest.

hvarg commented 4 years ago

The correct way to reference resources defined on assertions in a hypothesis is using the prefix user: I've tested the example described for Daniel and is working now.