Open DougalW opened 4 years ago
dgarijo
commented
4 years ago @DougalW thanks for reporting this. We will have a look and come back to you. Since everything is run through Docker, I believe you should not need to install anything locally. Have you tried running with Docker as we suggest in: https://oba.readthedocs.io/en/latest/running_server/?
DougalW
commented
4 years ago @dgarijo Yes I tried both approaches.
mosoriob
commented
4 years ago Hi @DougalW
It seems a bug. I'm trying to reproduce the error. Did you use the master branch or the release 3.4.0?
Thanks
mosoriob
commented
4 years ago Unable to reproduce using the master branch.
I have improved the tests on our CI system. Now, the dbpedia music tests includes:
You can see the test script here
mosoriob
commented
4 years ago Hey! I found it.
The following options are generated the error.
enable_post_paths: true
enable_delete_paths: true
enable_put_paths: trueIn the dbpedia_music, these options must be false because we cannot edit the dbpedia endpoint.
@DougalW feel safe to test the version 3.4.0 or 3.5.0 using the updated configuration file
@dgarijo I'm going to verify the model_catalog.
dgarijo
commented
4 years ago Thanks @mosoriob!! will try to see if we need to update the doc
ddtxra
commented
2 years ago issue does still exist when setting true on put, post and delete even on local endpoint.
My yaml file
name: persontest
output_dir: outputs
## OpenAPI Section
### Name, version and URL of the OpenAPI
openapi:
openapi: 3.0.1
info:
description: This is the API of the Persons test
title: PersonTest
version: v1.0.0
servers:
- url: http://localhost:3030/test/sparql
## Ontologies
### List of ontologies
ontologies:
- person_test.ttl
endpoint:
url: http://localhost:3030/test/sparql
prefix: http://test.com/rdf/resource/
## Filter the paths by methods
enable_get_paths: true
enable_post_paths: true
enable_delete_paths: false
enable_put_paths: false
## Select the classes to add in the API
follow_references: falseMy person_test.ttl file:
@prefix : <https://w3id.org/example#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
:Person rdf:type owl:Class ;
rdfs:label "Person"@en.
:Professor rdf:type owl:Class ;
rdfs:subClassOf :Person ;
owl:disjointWith :Student ;
rdfs:label "Professor"@en .
:Student rdf:type owl:Class ;
rdfs:subClassOf :Person ;
owl:disjointWith :Professor ;
rdfs:label "Student"@en .
:identifier rdf:type owl:DatatypeProperty ;
rdfs:domain :Person ;
rdfs:range xsd:string ;
rdfs:label "name"@en .
:gender rdf:type owl:DatatypeProperty ;
rdfs:domain :Person ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:oneOf [ rdf:type rdf:List ;
rdf:first "female" ;
rdf:rest [ rdf:type rdf:List ;
rdf:first "male" ;
rdf:rest rdf:nil
]
]
] ;
rdfs:label "gender"@en .
:researchField rdf:type owl:DatatypeProperty ;
rdfs:domain :Professor ;
rdfs:range xsd:string ;
rdfs:label "research field"@en .
:teachesTo rdf:type owl:ObjectProperty ;
rdfs:domain :Professor ;
rdfs:range :Student ;
rdfs:label "teaches to"@en .
:identifier rdf:type owl:DatatypeProperty , owl:FunctionalProperty ;
rdfs:domain :Person ;
rdfs:range xsd:string ;
rdfs:label "identifier"@en .
:hasRecord rdf:type owl:ObjectProperty , owl:FunctionalProperty ;
rdfs:domain :Student ;
rdfs:range :StudentRecord ;
rdfs:label "has record"@en .
:Professor rdf:type owl:Class ;
rdfs:subClassOf :Person ,
[ rdf:type owl:Restriction ;
owl:onProperty :teachesCourse ;
owl:someValuesFrom :Course
] .Is there any plan to fix it?
ddtxra
commented
2 years ago I used the version 3.6.0 btw: java -jar oba-3.6.0-jar-with-dependencies.jar -c config.yaml
dgarijo
commented
2 years ago @ddtxra, I will reopen the issue, but at the moment we do not have the resources to continue fixing issues/new features in OBA related to the OpenAPI implementation, just fixing issues in the mapping. Some of these problems may be caused by us using an older version of the OpenAPI server. We need to update the version and test whether the specification is supported successfully for the Python clients we were using (before there were some problems supporting unions).
If you dig in further and find the problem, please let us know.
Hi, when I build the specification for the DBpedia_music example it completes with success. When I generate the server it also completes successfully. When I run it either via Python3 or via the docker build, it generates this error:
The only other issue I could see in the log output was when I run the generate-server.sh script it thinks I don't have yapf installed. I installed it via pip but the script still returns this error. I even created a sim link in /usr/local/bin/yapf to point to the binary in my python3.8 installation, but same message is returned.
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