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Kohulan / DECIMER-Image-Segmentation

Chemical structure detection and segmentation tool for Journal articles.
https://decimer.ai
MIT License
81 stars 30 forks source link

Fixed error with np.bool, updated version of decimer_segmentation in __init__.py, added model file to gitignore #110

Closed alexey-krasnov closed 2 months ago

alexey-krasnov commented 2 months ago

The previous implementation falls with error when numpy>=1.2.0 is used:

File "/Users/**/decimer_segmentation/complete_structure.py", line 305, in complete_structure_mask
    segmentation_mask=np.any(mask_array, axis=2).astype(np.bool)
                                                        ^^^^^^^
  File "/Users/**/lib/python3.11/site-packages/numpy/__init__.py", line 324, in __getattr__
    raise AttributeError(__former_attrs__[attr])
AttributeError: module 'numpy' has no attribute 'bool'.
`np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
    https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations