Two bugs

[CurtisColwell]

I am having trouble getting this to work. I installed using "pip install decimer" in the anaconda prompt on Windows.

Running "decimer --model Canonical --image img.png" results first in

(DECIMER_V1) C:\Users\curtis.colwell\Desktop\Takeda Images\Img_Page_01\cells>decimer --model Canonical --image "C:\Users\curtis.colwell\Desktop\Takeda Images\Img_Page_01\cells\001-002.png"
Traceback (most recent call last):
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\Scripts\decimer.exe\__main__.py", line 7, in <module>
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\cli.py", line 35, in main
    get_QUOTE = helper.get_quote()
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\Network\helper.py", line 139, in get_quote
    quote = random_line(open((HERE.joinpath("Quotes_database")), "r"))
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\Network\helper.py", line 131, in random_line
    for num, aline in enumerate(file_name, 2):
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\encodings\cp1252.py", line 23, in decode
    return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x8d in position 7403: character maps to <undefined>

This is fixed by going to the helper.py and adding " encoding="utf8" " to line 139.

Then I get the following error and am stumped:

(DECIMER_V1) C:\Users\curtis.colwell\Desktop\Takeda Images\Img_Page_01\cells>decimer --model Canonical --image "C:\Users\curtis.colwell\Desktop\Takeda Images\Img_Page_01\cells\001-002.png"
Downloading trained model to C:\Users\curtis.colwell\.data\decimer\Trained_Models/Canonical/
C:\Users\curtis.colwell\.data\decimer\DECIMER_trained_models_v1.0.zip
... done downloading trained model!
Traceback (most recent call last):
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\Scripts\decimer.exe\__main__.py", line 7, in <module>
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\cli.py", line 74, in main
    ) = load_trained_model(model_id)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\cli.py", line 132, in load_trained_model
    helper.download_trained_weights(model_url, checkpoint_path)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\site-packages\decimer\Network\helper.py", line 104, in download_trained_weights
    model_path.parent.as_posix(),
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\subprocess.py", line 488, in run
    with Popen(*popenargs, **kwargs) as process:
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\subprocess.py", line 800, in __init__
    restore_signals, start_new_session)
  File "C:\Users\curtis.colwell\Anaconda3\envs\DECIMER_V1\lib\subprocess.py", line 1207, in _execute_child
    startupinfo)
FileNotFoundError: [WinError 2] The system cannot find the file specified

[Kohulan]

Hi @CurtisColwell ,

We have released a new version could you check that?

-Kohulan

[CurtisColwell]

Hi!

The new version is working on linux! Still can't run it on Windows, but at least I can run it somewhere, It might be a problem with the way it was installed on Windows. thanks!

[Kohulan]

@CurtisColwell ,

Thank you for confirming. Windows has path issues and so on. I could only suggest you to use an Ubuntu shell under windows.

Hope that helps.

-Kohulan