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KolmogorovLab / hapdup

Pipeline to convert a haploid assembly into diploid
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Error to run hapdup-0.12 #30

Closed EDISON2022W closed 1 year ago

EDISON2022W commented 1 year ago

Hi

I got an error (see below ) when running hapdup0.12. Any suggestions? Thanks.

The command is

singularity pull docker://mkolmogo/hapdup:0.12 HD_DIR='my_folder' singularity exec --bind $HD_DIR hapdup_0.12.sif hapdup --assembly $HD_DIR/assembly.fasta --bam $HD_DIR/lr_mapping.bam --out-dir $HD_DIR/hapdup -t 46 --rtype ont

The hapdup-0.12.simg was successfully downloaded. The singularity version is 2.4.2 The error is

Done. Container is at: ./hapdup-0.12.simg ERROR : Image path doesn't exists ABORT : Retval = 255

EDISON2022W commented 1 year ago

It works after updating singularity.