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KolmogorovLab / hapdup

Pipeline to convert a haploid assembly into diploid
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Cannot Find HapDup in Conda #33

Closed FrostFlow13 closed 1 year ago

FrostFlow13 commented 1 year ago

Hello!

I am trying to install HapDup using conda, specifically by following the instructions listed in the README.md:

#create a new conda environemnt and activate it conda create -n hapdup python=3.8

However, conda is saying that hapdup is not available from conda-forge, bioconda, or the default packages. The exact error text is as follows:

conda create -n hapdup_env hapdup python=3.8 Collecting package metadata (current_repodata.json): done Solving environment: unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  • hapdup

Current channels:

To search for alternate channels that may provide the conda package you're looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

Trying to search https://anaconda.org/, I also cannot seem to find it! Are these instructions old/placeholders, or am I perhaps doing something wrong?

Thank you, Andrew

FrostFlow13 commented 1 year ago

Nevermind, I just realized my mistake - that's not a package for HapDup, that's just naming the environment. My apologies!