Are Dorado reads supported?

KolmogorovLab / hapdup

Pipeline to convert a haploid assembly into diploid

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Are Dorado reads supported? #40

Closed Axze-rgb closed 4 months ago

Axze-rgb commented 4 months ago

Hello, the doc suggests only Guppy5+ are supported, but it's unclear to me if it means "higher version of Guppy" or "anything coming after". Since Dorado has an error profile that is quite different from Guppy's, I wonder if you recommend HapDup with dorado reads.

Thanks a lot

Alex

mikolmogorov commented 4 months ago

Hi Alex,

Yes, we've done quite a bit of assemblies with Dorado - it should work fine!

Misha

Axze-rgb commented 4 months ago

Awesome, thanks :)