Crashing cross.saturate

KonradZych / phenotypes2genotypes

Package for creating genetic map using gene expression data.

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Crashing cross.saturate #17

Closed DannyArends closed 12 years ago

DannyArends commented 12 years ago

cross.saturate crashes with the following error:

Error in rownames<-(*tmp*, value = c("10959", "25754", "43961", "55443", : length of 'dimnames' [1] not equal to array extent

KonradZych commented 12 years ago

Solved

DannyArends commented 12 years ago

NOT SOLVED see attached Code:

library(pheno2geno) load("E:\GBIC\Konrad\map\populationWithoutWrongBatch.rdata") p1 <- generateBiomarkers(population,overlapInd=5) saturation_1 <- cross.saturate(p1)

KonradZych commented 12 years ago

p1 <- generateBiomarkers(population,overlapInd=5) saturation_1 <- cross.saturate(p1) Error in cross.saturate(p1) : QTL scan results don't match with simulated genotypes, please, run scanQTLs function p1 <- scanQTLs(p1) Analysing marker: 50 saturation_1 <- cross.saturate(p1) No cross object provided, creating one using population object