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KonradZych / phenotypes2genotypes

Package for creating genetic map using gene expression data.
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scanQTLs not working #19

Closed DannyArends closed 12 years ago

DannyArends commented 12 years ago

I get the warning: you need to scanQTLs (they don't match) however after scanQTLs the error persists

library(pheno2geno) Loading required package: RankProd Loading required package: qtl Loading required package: mixtools Loading required package: boot Loading required package: MASS mixtools package version 0.4.4 Released June 2010 Type help(package="mixtools") to get started. This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.

load("E:\GBIC\Konrad\map\populationWithoutWrongBatch.rdata")

saturation_old <- cross.saturate(population) Error in cross.saturate(population) : QTL scan results don't match with simulated genotypes, please, run scanQTLs function population <- scanQTLs(population) Analysing marker: 50 There were 50 or more warnings (use warnings() to see the first 50) saturation_old <- cross.saturate(population) Error in cross.saturate(population) : QTL scan results don't match with simulated genotypes, please, run scanQTLs function

KonradZych commented 12 years ago

load("G:\data\true analysis\new hot shit\populationWithoutWrongBatch.rdata") saturation_old <- cross.saturate(population) No cross object provided, creating one using population object