ALLAA specified at a certain residue position

Kortemme-Lab / flex_ddG_tutorial

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ALLAA specified at a certain residue position #5

Closed bioragul closed 4 years ago

bioragul commented 5 years ago

Hello, I am wondering how this protocol handles if I specify ALLAA for a residue position. Do we get the ddg value for 19 other amino acids or the best mutant residue for that position? When I try this I do get results but not sure if it is for the best mutant residue for that position or something else. Thanks

kylebarlow commented 4 years ago

The results won't work as you intend if you use ALLAA in this manner - instead I would suggest looking at the second "saturation" example I have uploaded.