The Backrub step generates just a single backrub sampled conformation, right? You should say this and indicate where someone should look for instructions about how to run the full benchmark.
Hopefully this is clearer now. I have also added "How to run the full benchmark" sections in both the protocols/backrub_seqtol/README.rst file and the hpc/sge/backrub_seqtol/README.rst.
The Backrub step generates just a single backrub sampled conformation, right? You should say this and indicate where someone should look for instructions about how to run the full benchmark.