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KosinskiLab / AlphaPulldown

https://doi.org/10.1093/bioinformatics/btac749
GNU General Public License v3.0
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Runtime of each prediction #359

Closed what-is-what closed 3 weeks ago

what-is-what commented 3 weeks ago

I am planning to screen approximately 4,000 proteins in pulldown mode. However, there is no way to determine the running time with the current ReadMe or instructions. Could you tell me if the time taken to predict the interaction for a bait-candidate pair is similar to that of AlphaFold2? If you could provide the running time for a single prediction, it would be easy to calculate the total running time.

dingquanyu commented 3 weeks ago

Hi,

Since the programme is based on AlphaFold Multimer, the calculations on GPU should cost similar time. Unfortunately, I cannot find a way of estimating the running time.

Yours Dingquan