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KosinskiLab / AlphaPulldown

https://doi.org/10.1093/bioinformatics/btac749
GNU General Public License v3.0
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Update libffi version #364

Closed dingquanyu closed 2 weeks ago

dingquanyu commented 2 weeks ago

Fixed the libffi error when build and push alphapulldown docker image

dingquanyu commented 2 weeks ago

The GitHub action for building the docker image works fine now but the other GitHub action failed because the disk space is not enough. I think we can merge this for now and I'm working on the update of backend to avoid installing PyTorch and unicode dependencies in the first place.

maurerv commented 2 weeks ago

I have seen other projects get around this problem by reducing the size of the build environment and added that in 4f4f1ef

maurerv commented 2 weeks ago

It appears that moving to the classic conda solver, together with cleaning the build environment, does the trick. However, the classic solver is much slower than libmamba and we should revisit this in the future.

@dingquanyu feel free to merge for now

dingquanyu commented 2 weeks ago

It appears that moving to the classic conda solver, together with cleaning the build environment, does the trick. However, the classic solver is much slower than libmamba and we should revisit this in the future.

@dingquanyu feel free to merge for now

I see. Thanks for working on this issue. I will merge for now.