Add code to form y vector for 16S data

KoslickiLab / DiversityOptimization

Minimizing biological diversity to improve microbial taxonomic reconstruction

MIT License

0 stars 0 forks source link

Add code to form y vector for 16S data #4

Closed dkoslicki closed 4 years ago

dkoslicki commented 4 years ago

input: metagenomic 16S FASTA/FASTQ file, k-mer size output: total count of k-mers in the sample (i.e. the y vector) options: use reverse complements/canonical k-mers or not