KoslickiLab / YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
28 stars 7 forks source link

YAC 97 -Update the config.json of the pretrained databases to path where it is located #102

Closed kvnthomas98 closed 6 months ago

kvnthomas98 commented 7 months ago

This PR is used to update the config.json of the downloaded pretrained databases to the path where it is located

codecov[bot] commented 7 months ago

Codecov Report

Attention: 10 lines in your changes are missing coverage. Please review.

Comparison is base (b4f58e3) 71.92% compared to head (0e2057d) 71.53%.

Files Patch % Lines
yacht/download_pretrained_ref_db.py 47.36% 10 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #102 +/- ## ========================================== - Coverage 71.92% 71.53% -0.40% ========================================== Files 11 11 Lines 1058 1075 +17 ========================================== + Hits 761 769 +8 - Misses 297 306 +9 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

mfl15 commented 6 months ago

@kvnthomas98 hello, after executing on this branch:

yacht download pretrained_ref_db --database gtdb --db_version rs214 --k 31 --ani_thresh 0.9995 --outfolder ./

I've got the file with "/Enter/Path/Here/", could you please tell if it has to be fixed in scope of this PR? I am on Mac m2 Docker.

image
sonarcloud[bot] commented 6 months ago

Quality Gate Passed Quality Gate passed

Issues
1 New issue

Measures
0 Security Hotspots
No data about Coverage
0.0% Duplication on New Code

See analysis details on SonarCloud