KoslickiLab / YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
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Optimize code speed #108

Open mfl15 opened 6 months ago

mfl15 commented 6 months ago

Compiled language for core/time consuming parts? Both the training and the running.

Hasn’t had anyone look at efficiency yet

Determine if the training data format (npz files) are sufficiently scalable. Eg. might consider HDF5, or some sparse representation.