Investigate C/Rust implementation

KoslickiLab / YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome

MIT License

29 stars 7 forks source link

Investigate C/Rust implementation #8

Closed dkoslicki closed 9 months ago

dkoslicki commented 1 year ago

Under the hood, YACHT is a simple calculation, with just a reliance on Sourmash. I imagine we could get a huge performance boost by moving from Python to a compiled language like C or Rust.

dkoslicki commented 9 months ago

Closing this as multigather and the like offered enough speed improvements for now.