KoslickiLab / YACHT

A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
28 stars 7 forks source link

Profiling example #99

Closed mfl15 closed 6 months ago

mfl15 commented 7 months ago

https://pypi.org/project/line-profiler-pycharm/

mfl15 commented 7 months ago

{"profiledFunctions": [{"file": "/home/runner/work/YACHT/YACHT/yacht/make_training_data_from_sketches.py", "lineNo": 30, "functionName": "main", "profiledLines": [{"lineNo": 33, "hits": 1, "time": 134332}, {"lineNo": 34, "hits": 1, "time": 240}, {"lineNo": 35, "hits": 1, "time": 371}, {"lineNo": 36, "hits": 1, "time": 190}, {"lineNo": 37, "hits": 1, "time": 311}, {"lineNo": 38, "hits": 1, "time": 26920}, {"lineNo": 39, "hits": 1, "time": 310}, {"lineNo": 42, "hits": 1, "time": 352962}, {"lineNo": 43, "hits": 1, "time": 8576}, {"lineNo": 46, "hits": 2, "time": 61044}, {"lineNo": 47, "hits": 1, "time": 1012}, {"lineNo": 50, "hits": 1, "time": 166101}, {"lineNo": 51, "hits": 1, "time": 8416}, {"lineNo": 52, "hits": 1, "time": 21159}, {"lineNo": 56, "hits": 1, "time": 6642}, {"lineNo": 59, "hits": 1, "time": 100509}, {"lineNo": 62, "hits": 1, "time": 150653}, {"lineNo": 63, "hits": 2, "time": 4428316}, {"lineNo": 64, "hits": 1, "time": 3020553}, {"lineNo": 67, "hits": 1, "time": 166272}, {"lineNo": 68, "hits": 1, "time": 164900711}, {"lineNo": 70, "hits": 1, "time": 265769}, {"lineNo": 71, "hits": 21, "time": 12755}, {"lineNo": 72, "hits": 1, "time": 1102}, {"lineNo": 74, "hits": 1, "time": 1012}, {"lineNo": 77, "hits": 1, "time": 160501}, {"lineNo": 78, "hits": 1, "time": 561734095}, {"lineNo": 82, "hits": 1, "time": 228950}, {"lineNo": 83, "hits": 1, "time": 5223790}, {"lineNo": 86, "hits": 1, "time": 159940}, {"lineNo": 87, "hits": 1, "time": 10910}, {"lineNo": 88, "hits": 1, "time": 1002032}, {"lineNo": 91, "hits": 1, "time": 152036}, {"lineNo": 92, "hits": 1, "time": 4569}, {"lineNo": 93, "hits": 1, "time": 192602}, {"lineNo": 94, "hits": 1, "time": 1092}, {"lineNo": 101, "hits": 1, "time": 178005}, {"lineNo": 102, "hits": 1, "time": 9017}, {"lineNo": 103, "hits": 3, "time": 206047}, {"lineNo": 104, "hits": 1, "time": 351}, {"lineNo": 105, "hits": 1, "time": 340}, {"lineNo": 106, "hits": 1, "time": 271}, {"lineNo": 107, "hits": 1, "time": 281}, {"lineNo": 108, "hits": 2, "time": 40817}]}], "unit": 1e-09}

mfl15 commented 7 months ago

https://pypi.org/project/line-profiler-pycharm/

sonarcloud[bot] commented 7 months ago

Quality Gate Passed Quality Gate passed

Kudos, no new issues were introduced!

0 New issues
0 Security Hotspots
No data about Coverage
0.0% Duplication on New Code

See analysis details on SonarCloud

codecov[bot] commented 7 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (345aeb1) 77.88% compared to head (41c2433) 71.09%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #99 +/- ## ========================================== - Coverage 77.88% 71.09% -6.80% ========================================== Files 23 11 -12 Lines 1605 1055 -550 ========================================== - Hits 1250 750 -500 + Misses 355 305 -50 ```

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