This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.
Updated solvers to scipy.brentq so that p is not negative. endpoints of brentq are 0.01 and 0.99. Need to theoretically prove that f3(0.01) >0 and f3(0.99) < 0. The same should hold for f4
Updated solvers to scipy.brentq so that p is not negative. endpoints of brentq are 0.01 and 0.99. Need to theoretically prove that f3(0.01) >0 and f3(0.99) < 0. The same should hold for f4