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KosukeHamazaki / RAINBOWR

Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007663
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Error message "code for methods in class “Rcpp_XXX” was not checked for suspicious field assignments" #6

Open motthy opened 2 years ago

motthy commented 2 years ago

Hi, Hamazaki san,

I have installed RAINBOWR on HPC. When the library start, the following message show stdout. Although GWAS calculation and plot may work fine.... Is there any problem with this? 

>require(RAINBOWR)
code for methods in class “Rcpp_SpExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPoly” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPoly” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPolyPart” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPolyPart” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPolygons” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_SpPolygons” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
Registered S3 method overwritten by 'spdep':
  method   from
  plot.mst ape 
Registered S3 method overwritten by 'pegas':
  method      from
  print.amova ade4
code for methods in class “Rcpp_Fitch” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “Rcpp_Fitch” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)