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KrasnitzLab
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CNVMetrics
R Package to compare copy number variant (CNV) results from multiple samples/methods
https://krasnitzlab.github.io/CNVMetrics/
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Extracting dendrogram
#62
gevro
opened
3 months ago
6
Update version to 1.5.1
#61
adeschen
closed
1 year ago
1
Merge with latest version from Bioconductor
#60
adeschen
closed
1 year ago
0
Solve issue with hole in segment
#59
belleau
closed
1 year ago
0
Update some github action version to v3
#58
adeschen
closed
2 years ago
1
Add simulation method
#57
adeschen
closed
2 years ago
1
Update code to current Bioconductor version
#56
adeschen
closed
2 years ago
1
merge
#55
belleau
closed
2 years ago
0
Update package version to 0.99.3
#54
adeschen
closed
2 years ago
1
Update installation section in vignette
#53
adeschen
closed
2 years ago
1
Update README file
#52
adeschen
closed
2 years ago
1
Adding Acknowledgments section in vignette
#51
adeschen
closed
2 years ago
1
Update package version and date in DESCRIPTION file
#50
adeschen
closed
3 years ago
1
Remove Rproj file
#49
adeschen
closed
3 years ago
1
Update citation; update R requirement and package version to 0.99.0
#48
adeschen
closed
3 years ago
1
Update list of authors
#47
adeschen
closed
3 years ago
0
Update package description
#46
adeschen
closed
3 years ago
1
Update vignette
#45
adeschen
closed
3 years ago
1
Update vignette content
#44
adeschen
closed
3 years ago
0
Remove unused calculateOneOverlapMetric() function
#43
adeschen
closed
3 years ago
0
Remove unused function calculateOneLog2valueMetric()
#42
adeschen
closed
3 years ago
1
Remove spaces before and after = to follow Bioconductor rules
#41
adeschen
closed
3 years ago
1
Resolves #18
#40
adeschen
closed
3 years ago
0
Removing deprecated method doRegression()
#39
adeschen
closed
3 years ago
1
Add return value in is.CNVMetric() documentation
#38
adeschen
closed
3 years ago
1
Correct line length and indent
#37
adeschen
closed
3 years ago
1
New CITATION file
#36
adeschen
closed
3 years ago
1
Enable user-specific states in the calculation of the overlap metrics
#35
adeschen
closed
3 years ago
0
Add link to F1000Research poster in vignette
#34
adeschen
closed
3 years ago
1
Adding citing section to README and vignette
#33
adeschen
closed
3 years ago
1
Add unit tests for calculateWeightedEuclideanDistanceFor2Samples() me…
#32
adeschen
closed
3 years ago
0
Change weighted Euclidean metric to use log2 instead of log.
#31
adeschen
closed
3 years ago
1
Update vignette
#30
adeschen
closed
3 years ago
0
Major changes in the methods related to weighted Euclidean distance-based metric; update vignette and adding logo
#29
adeschen
closed
3 years ago
1
Update vignette
#28
adeschen
closed
3 years ago
0
Equations not displayed correctly in website
#27
adeschen
opened
3 years ago
1
Remove extra lines from CSS file
#26
adeschen
closed
3 years ago
1
Adding CSS for pkgdown web pages
#25
adeschen
closed
3 years ago
0
Remove paste() in stop() functions
#24
adeschen
closed
3 years ago
0
Update example in prepareInformation() method
#23
adeschen
closed
3 years ago
1
Enable wider selection of states (AMP/DEL) for discrete metrics
#22
adeschen
closed
3 years ago
0
Use same input function for both continuous and discrete metrics
#21
adeschen
closed
3 years ago
1
Add documentation for weighted euclidean metric
#20
adeschen
closed
3 years ago
1
Adding information about weighted euclidean distance - solve #20
#19
adeschen
closed
3 years ago
1
Add parallel option
#18
adeschen
closed
3 years ago
0
Remove unwanted spaces in vignette
#17
adeschen
closed
3 years ago
1
Update documentation related to continuous metrics
#16
adeschen
closed
3 years ago
1
Add continuous metrics
#15
adeschen
opened
3 years ago
0
Statistics associated to metrics
#14
adeschen
opened
3 years ago
1
Update vignette
#13
adeschen
closed
3 years ago
0
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