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KratosMultiphysics / Kratos

Kratos Multiphysics (A.K.A Kratos) is a framework for building parallel multi-disciplinary simulation software. Modularity, extensibility and HPC are the main objectives. Kratos has BSD license and is written in C++ with extensive Python interface.
https://kratosmultiphysics.github.io/Kratos/
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Error when porting to pybind11 #1598

Closed RiccardoRossi closed 6 years ago

RiccardoRossi commented 6 years ago

@KratosMultiphysics/structural-mechanics guys, when porting to pybind i get a number of errors which i believe are actually mistakes of the current implementation which are correctly detected by pybind but not by the current boost python interface. I'll attach here the error list (i actually think it is always the same error repeated many times)

could you take a look?

test_execution (NightlyTests.SDTwoDShearQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_2D_shear_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDTwoDShearTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_2D_shear_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDTwoDTensionQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_2D_tension_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDTwoDTensionTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_2D_tension_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDThreeDShearHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_3D_shear_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDThreeDShearTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_3D_shear_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDThreeDTensionHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_3D_tension_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SDThreeDTensionTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/small_disp/patch_test_3D_tension_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLTwoDShearQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_2D_shear_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLTwoDShearTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_2D_shear_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLTwoDTensionQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_2D_tension_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLTwoDTensionTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_2D_tension_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLThreeDShearHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_3D_shear_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLThreeDShearTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_3D_shear_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLThreeDTensionHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_3D_tension_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.TLThreeDTensionTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/total_lagrangian/patch_test_3D_tension_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULTwoDShearQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_2D_shear_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULTwoDShearTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_2D_shear_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULTwoDTensionQuaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_2D_tension_qua_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULTwoDTensionTriPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_2D_tension_tri_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULThreeDShearHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_3D_shear_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULThreeDShearTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_3D_shear_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULThreeDTensionHexaPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_3D_tension_hexa_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ULThreeDTensionTetraPatchTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='patch_test/updated_lagrangian/patch_test_3D_tension_tetra_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SprismMembranePatchTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='sprism_test/patch_membrane_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.SprismBendingPatchTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='sprism_test/patch_bending_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Fofi4PointTentnoCableTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='formfinding_test/Fofi_4Point_Tent_noCable_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Fofi4PointTentCableTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='formfinding_test/Fofi_4Point_Tent_Cable_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.MembraneQ4PointLoadTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='membrane_test/Membrane_Q4_PointLoad_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.MembraneQ4TrussPointLoadTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='membrane_test/Membrane_Q4_Truss_PointLoad_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NTrussDynamicTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='truss_test/dynamic_3D2NTruss_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NTrussLinearTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='truss_test/linear_3D2NTruss_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NTrussTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='truss_test/nonlinear_3D2NTruss_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NBeamCrTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='beam_test/nonlinear_3D2NBeamCr_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NBeamCrLinearTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='beam_test/linear_3D2NBeamCr_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.Simple3D2NBeamCrDynamicTest) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='beam_test/dynamic_3D2NBeamCr_test_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ShellT3IsotropicLinearStaticStructScordelisLoRoofTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='shell_test/Shell_T3_isotropic_linear_static_struct_scordelis_lo_roof_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ShellT3AndQ4LinearStaticStructScordelisLoRoofTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='shell_test/Shell_T3andQ4_linear_static_struct_scordelis_lo_roof_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ShellT3AndQ4LinearStaticStructPinchedCylinderTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='shell_test/Shell_T3andQ4_linear_static_struct_pinched_cylinder_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ShellT3AndQ4LinearStaticStructPinchedHemisphereTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='shell_test/Shell_T3andQ4_linear_static_struct_pinched_hemisphere_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear() test_execution (NightlyTests.ShellT3AndQ4NonLinearStaticStructHingedCylRoofSnapthroughTests) ... ERROR

Stdout: ::[MechanicalSolver]:: Construction finished /home/rrossi/compiled_libraries/PythonDebug/lib/python3.6/unittest/case.py:633: ResourceWarning: unclosed file <_io.TextIOWrapper name='shell_test/Shell_T3andQ4_nonlinear_static_struct_hinged_cyl_roof_snapthrough_parameters.json' mode='r' encoding='UTF-8'> outcome.errors.clear()

philbucher commented 6 years ago

I think I know what this is, I will push to your branch so that you can try it

philbucher commented 6 years ago

I pushed, can you please try?

RiccardoRossi commented 6 years ago

are u sure you pushed? i get nothing...

btw, the branch is "origin/switching_to_std_pointer"

RiccardoRossi commented 6 years ago

to my understanding the optimizer will remove this, since if(false) can be evaluated at compile time

philbucher commented 6 years ago

I pushed, it even shows up in your PR

RiccardoRossi commented 6 years ago

ok, you are right, i get a different error, related to the logger now.

this is something on my side. thx!

philbucher commented 6 years ago

You are welcome (And lucky I had a very similar error yesterday)