Kraysent
commented
1 year ago # You can use YAML anchors to substitute some values that repeat several times over the file.
# About YAML anchors: https://support.atlassian.com/bitbucket-cloud/docs/yaml-anchors/
host: &host
type: slice
parts: [[0, 0.666666]]
host_color: &host_clr b
satellite: &satellite
type: slice
parts: [[0.666666, 1]]
sat_color: &sat_clr r
all_color: &all_clr y
# File with a set of snapshots.
input_file:
format: fits
filenames:
- !env "{WORKING_DIR}/test_out.fits"
# You can specify filename where JSON logs would be saved.
logging:
level: debug
filename: !env "{WORKING_DIR}/test_json_log.txt"
datefmt: "%Y-%m-%d %H:%M:%S"
# Visualizer module configuration. It specifies list of panels.
visualizer:
output_dir: !env "{WORKING_DIR}/analysis"
title: "Time: {time:07.01f} Myr"
pickle_filename: "pickle-{i:03}.pickle"
figsize: [20, 11]
pic_filename: "img-{i:03d}.png"
panels:
- id: zy_plane
coords: [0, 0.35, 0.35, 0.6]
params:
xlim: [-45, 45]
ylim: [-40, 40]
xlabel: "z, kpc"
ylabel: "y, kpc"
xticks: [0, 10]
yticks: [0, 10]
- id: xy_plane
coords: [0.33, 0.35, 0.35, 0.6]
params:
xlim: [-45, 45]
ylim: [-40, 40]
xlabel: "x, kpc"
yticks: []
xticks: [0, 10]
- id: potential_dist_plane
coords: [0.72, 0.66, 0.14, 0.3]
params:
xlim: [0, 50]
ylim: [0, 3]
xlabel: "$r$, kpc"
ylabel: "Potential, portion of the average"
grid: True
- id: bound_mass_evolution_plane
coords: [0.72, 0.33, 0.14, 0.3]
params:
xlim: [0, 10000]
ylim: [0, 3.e+11]
xlabel: "Time, Myr"
ylabel: "Bound mass, MSun"
grid: True
- id: separation_evolution_panel
coords: [0, 0, 0.14, 0.3]
params:
xlim: [0, 10000]
ylim: [0, 150]
xlabel: "Time, Myr"
ylabel: "Separation, kpc"
grid: True
- id: velocity_profile_panel
coords: [0.18, 0, 0.32, 0.3]
params:
xlim: [0, 15]
ylim: [0, 400]
xlabel: "$r$, kpc"
ylabel: "$v$, km/s"
grid: True
- id: density_profile_panel
coords: [0.54, 0, 0.32, 0.3]
params:
xlim: [0, 50]
ylim: [0, 4.e+8]
xlabel: "$r$, kpc"
ylabel: '$\rho$, MSun / kpc ** 3'
grid: True
# List of tasks. Each one describes arguments to its constructor and list of actions.
tasks:
- name: PotentialCenterTask
id: host_potential_center
actions_before:
- *host
- name: PotentialCenterTask
id: sat_potential_center
actions_before:
- *satellite
- name: PotentialCenterTask
id: total_potential_center
- name: ScatterTask
args: &args
expressions:
x: "x"
y: "y"
z: "z"
m: "m"
units:
x: !q [1, kpc]
y: !q [1, kpc]
z: !q [1, kpc]
m: !q [1, MSun]
actions_before:
- *host
- type: barion_filter
actions_after:
# You can plot one result several times in different projections.
- type: visualizer
id: xy_plane
is_density_plot: True
resolution: 700
extent: [-45, 45, -40, 40]
channel: *host_clr
x: x
y: y
weights: m
- type: visualizer
id: zy_plane
is_density_plot: True
resolution: 700
extent: [-45, 45, -40, 40]
channel: *host_clr
x: z
y: y
weights: m
- name: ScatterTask
args: *args
actions_before:
- *satellite
- type: barion_filter
actions_after:
- type: visualizer
id: xy_plane
is_density_plot: True
resolution: 700
extent: [-45, 45, -40, 40]
channel: *sat_clr
x: x
y: y
weights: m
- type: visualizer
id: zy_plane
is_density_plot: True
resolution: 700
extent: [-45, 45, -40, 40]
channel: *sat_clr
x: z
y: y
weights: m
- name: ScatterTask
args: *args
actions_before:
- type: slice
id: 0
actions_after:
- type: visualizer
id: xy_plane
linestyle: solid
color: *host_clr
marker: o
markersize: 5
x: x
y: y
- type: visualizer
id: zy_plane
linestyle: solid
color: *host_clr
marker: o
markersize: 5
x: z
y: y
- name: ScatterTask
args: *args
actions_before:
- type: slice
id: 1000001
actions_after:
- type: visualizer
id: xy_plane
linestyle: solid
color: *sat_clr
marker: o
markersize: 5
x: x
y: y
- type: visualizer
id: zy_plane
linestyle: solid
color: *sat_clr
marker: o
markersize: 5
x: z
y: y
- name: PotentialTask
inputs:
center: host_potential_center.position
actions_before:
- *host
actions_after:
- type: visualizer
id: potential_dist_plane
linestyle: None
color: *host_clr
label: host
x: radii
y: potential
- name: PotentialTask
inputs:
center: sat_potential_center.position
actions_before:
- *satellite
actions_after:
- type: visualizer
id: potential_dist_plane
linestyle: None
color: *sat_clr
label: satellite
x: radii
y: potential
- name: PotentialTask
inputs:
center: total_potential_center.position
actions_after:
- type: visualizer
id: potential_dist_plane
linestyle: None
color: *all_clr
label: all
x: radii
y: potential
- name: BoundMassTask
args:
number_of_iterations: 5
actions_before:
- *satellite
actions_after:
- type: visualizer
id: bound_mass_evolution_plane
linestyle: solid
color: r
x: times
y: bound_mass
- type: logging
print_last: True
id: bound_mass_data
- name: DistanceTask
inputs:
start: host_potential_center.position
end: sat_potential_center.position
actions_after:
- type: visualizer
id: separation_evolution_panel
linestyle: solid
color: r
x: times
y: dist
- name: VelocityProfileTask
inputs:
center: host_potential_center.position
center_vel: host_potential_center.velocity
actions_before:
- *host
actions_after:
- type: visualizer
id: velocity_profile_panel
markersize: 0.5
linestyle: None
color: *host_clr
label: host
x: radii
y: velocity
- name: VelocityProfileTask
inputs:
center: sat_potential_center.position
center_vel: sat_potential_center.velocity
actions_before:
- *satellite
actions_after:
- type: visualizer
id: velocity_profile_panel
markersize: 0.5
linestyle: None
color: *sat_clr
label: satellite
x: radii
y: velocity
- name: VelocityProfileTask
inputs:
center: total_potential_center.position
center_vel: total_potential_center.velocity
actions_after:
- type: visualizer
id: velocity_profile_panel
markersize: 0.5
linestyle: None
color: *all_clr
label: all
x: radii
y: velocity
- name: DensityProfileTask
inputs:
center: host_potential_center.position
actions_before:
- *host
actions_after:
- type: visualizer
id: density_profile_panel
markersize: 0.5
linestyle: None
color: *host_clr
label: host
x: radii
y: densities
- name: DensityProfileTask
inputs:
center: sat_potential_center.position
actions_before:
- *satellite
actions_after:
- type: visualizer
id: density_profile_panel
markersize: 0.5
linestyle: None
color: *sat_clr
label: satellite
x: radii
y: densities
- name: DensityProfileTask
inputs:
center: total_potential_center.position
actions_after:
- type: visualizer
id: density_profile_panel
markersize: 0.5
linestyle: None
color: *all_clr
label: all
x: radii
y: densities
See monologue in #147. Something's wrong, need to identify where the problem is.
Start with the same simulation as in the end of aforementioned ticket, then gradually decrease number of the tasks until memory does not stop leaking.