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KrishnaswamyLab
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MELD
Quantifying experimental perturbations at single cell resolution
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Can MELD be applied to time series data? Is this an appropriate approach?
#68
eL-Gene
opened
3 weeks ago
0
Robustness of MELD with small datasets
#67
Rumengol
opened
7 months ago
0
Normalization suggestion
#66
paolabc
opened
1 year ago
0
How to integrate sample likelihoods from different replicates
#65
nickhir
opened
1 year ago
0
tutorial links do not work
#64
nickhir
closed
1 year ago
0
Update Actions
#63
atong01
closed
1 year ago
3
Problem with pip installation
#62
ShambaMondal
closed
1 year ago
11
What to do with unmatched control samples
#61
nickhir
closed
1 year ago
2
Treatment/Control Pairing
#60
paulstumpges
closed
1 year ago
2
UMAP instead of PHATE embedding
#59
michallipinski
closed
1 year ago
1
About simulation data
#58
mugpeng
opened
2 years ago
1
Synthetic Ground Truth Datasets
#57
DonyorM
opened
2 years ago
1
Can we use MELD on single replicate
#56
Rohit-Satyam
opened
2 years ago
8
Error using the VFC algorithm for clustering analysis
#55
GabrielBaldissera
opened
2 years ago
3
NameError: name 'curr_mse' is not defined
#54
RinconFer
opened
2 years ago
2
`pip install meld` install `sklearn` instead of `scikit-learn`
#53
scottgigante-immunai
closed
2 years ago
1
Using graph from Scanpy
#52
Hrovatin
closed
3 years ago
6
Get aData object to process MELD graph parameters
#51
Baboon61
closed
1 year ago
2
batch correction
#50
JBreunig
closed
3 years ago
8
Fix index check for sample_labels
#49
dburkhardt
closed
3 years ago
0
Adding thresholding notebook
#48
dburkhardt
closed
3 years ago
0
Update benchmark - add n_pca argument
#47
dburkhardt
closed
3 years ago
0
Tutorial for running MELD on >2 treatment conditions
#46
mdmanurung
opened
3 years ago
5
Fixing Sphinx / RTD, Update code style, and add Github Actions
#45
dburkhardt
closed
3 years ago
0
Update v1.0.0 - Getting ready for publication
#44
dburkhardt
closed
3 years ago
0
Update __init__.py
#43
dburkhardt
closed
3 years ago
0
can't find get_cmap function
#42
wupeng2
closed
3 years ago
3
Dev
#41
dburkhardt
closed
4 years ago
0
Wagner2018_Chordin_Cas9_Mutagenesis is not reproducible
#40
VPetukhov
closed
4 years ago
2
Update version.py
#39
dburkhardt
closed
4 years ago
0
correct version
#38
dburkhardt
closed
4 years ago
0
Updates accompanying revision
#37
dburkhardt
closed
4 years ago
0
Updating VFC operator
#36
dburkhardt
closed
3 years ago
0
Graphtools estimator
#35
scottgigante
closed
4 years ago
0
Graphtools estimator
#34
scottgigante
closed
4 years ago
0
Fixing readme
#33
dburkhardt
closed
4 years ago
2
MELD v0.2.4
#32
scottgigante
closed
4 years ago
0
Backprop
#31
dburkhardt
closed
4 years ago
0
Fix tutorial
#30
dburkhardt
closed
4 years ago
0
Updating bugfix branch
#29
dburkhardt
closed
4 years ago
0
Whoops
#28
dburkhardt
closed
4 years ago
0
fixing tutorial
#27
dburkhardt
closed
4 years ago
0
Dev
#26
dburkhardt
closed
5 years ago
0
README update
#25
dburkhardt
closed
5 years ago
0
Updating License
#24
dburkhardt
closed
5 years ago
0
VFC doesn't work with >1D RES
#23
scottgigante
closed
3 years ago
1
Unnecessary type restriction
#22
scottgigante
closed
3 years ago
0
Fix MELD API
#21
dburkhardt
closed
5 years ago
0
VertexFrequencyCluster and MELD API inconsistent
#20
scottgigante
closed
5 years ago
1
VertexFrequencyCluster `fit_predict` docstring is misleading
#19
scottgigante
closed
5 years ago
1
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