Im trying to use SAUCIE.py with --batch_correct arg.
In the train_batch_correction method, it looks the method expects a series of raw files.
Does it mean that each of raw file should contain only one sample's rna-seq?
If I want to correct batches among 1000 samples, 1000 csv files should be prepared in the input_dir?
Im trying to use SAUCIE.py with --batch_correct arg.
In the train_batch_correction method, it looks the method expects a series of raw files. Does it mean that each of raw file should contain only one sample's rna-seq?
If I want to correct batches among 1000 samples, 1000 csv files should be prepared in the input_dir?
Or one batch per csv file?