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KrishnaswamyLab / phateR

PHATE dimensionality reduction method implemented in R
GNU General Public License v2.0
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alpha_decay is deprecated #24

Closed igordot closed 6 years ago

igordot commented 6 years ago

I am getting the following warning:

/path/python3.6/site-packages/phate/phate.py:181: FutureWarning: alpha_decay is deprecated. Use `a=None` to disable alpha decay in future.
  " to disable alpha decay in future.", FutureWarning)

It looks like the actual command being called still includes alpha_decay. See: https://github.com/KrishnaswamyLab/phateR/blob/master/R/phate.R#L249

It's just a warning, so everything seems to work fine, but it might be worth fixing if it's not too much work.

scottgigante commented 6 years ago

Thanks @igordot for pointing this out! I'll put in a fix to the next maintenance release.