Is it possible to get n PHATE components?

KrishnaswamyLab / phateR

PHATE dimensionality reduction method implemented in R

GNU General Public License v2.0

77 stars 9 forks source link

Is it possible to get n PHATE components? #35

Closed davisidarta closed 5 years ago

davisidarta commented 5 years ago

Hi!

I'm relatively new to PHATE (I've read your preprint, but I don't have that much of a math background). I'm wondering if it is possible to get n PHATE components for a given dataset. If so, is it possible to do it within phateR?

scottgigante commented 5 years ago

Hi @davisidarta, there is a parameter in the phate function called ndim. You can modify this to get a different number of components.