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KrishnaswamyLab / phateR

PHATE dimensionality reduction method implemented in R
GNU General Public License v2.0
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Potential installation issue with phate in an renv environment #57

Open latlio opened 3 years ago

latlio commented 3 years ago

Issue

which python /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate/bin/python (/Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate

which pip /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate/bin/pip (/Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate)

reticulate::py_discover_config(required_module = "phate") python: /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate/bin/python libpython: /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate/lib/libpython3.6m.dylib pythonhome: /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate:/Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate version: 3.6.13 | packaged by conda-forge | (default, Feb 19 2021, 05:36:16) [GCC Clang 11.0.1] numpy: /Users/lioul/Desktop/Merck/Projects/drug_seq/drug_seq_analysis/renv/python/r-reticulate/lib/python3.6/site-packages/numpy numpy_version: 1.19.5

The issue comes about when I try reticulate::import("phate")

Error in py_module_import(module, convert = convert) : ModuleNotFoundError: No module named 'phate'

I've also tried import phate in python

Version Info

platform x86_64-apple-darwin17.0
arch x86_64
os darwin17.0
system x86_64, darwin17.0
status
major 4
minor 0.4
year 2021
month 02
day 15
svn rev 80002
language R
version.string R version 4.0.4 (2021-02-15) nickname Lost Library Book