Open ad2n15 opened 1 month ago
Hi team,
How long does it take to run PHATE on 38003 observations and 500 variables?
I am using phateR and HPC nodes with 150G memory.
Actually, it is running for long time and I got
Calculating PHATE... Running PHATE on 38003 observations and 500 variables. Calculating graph and diffusion operator... Calculating PCA...
caught segfault address (nil), cause 'unknown'
Traceback: 1: py_call_impl(callable, call_args$unnamed, call_args$named) 2: operator$fit_transform(data, t_max = t.max) 3: phate(phate_data_input) An irrecoverable exception occurred. R is aborting now ...
Hi team,
How long does it take to run PHATE on 38003 observations and 500 variables?
I am using phateR and HPC nodes with 150G memory.
Actually, it is running for long time and I got
Calculating PHATE... Running PHATE on 38003 observations and 500 variables. Calculating graph and diffusion operator... Calculating PCA...
caught segfault address (nil), cause 'unknown'
Traceback: 1: py_call_impl(callable, call_args$unnamed, call_args$named) 2: operator$fit_transform(data, t_max = t.max) 3: phate(phate_data_input) An irrecoverable exception occurred. R is aborting now ...