Hey,
I was trying to install the package (both from GitHub using devtools and via BioConductor) but kept getting an error message.
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.0 (2021-05-18)
Installing package(s) 'phemd'
Warning in .inet_warning(msg) :
package ‘phemd’ is not available for Bioconductor version '3.14'
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Old packages: 'qqconf'
I also tried installing it using the instructions in the readme description, but I got the error:
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘phemd’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Fehler: package ‘Seurat’ 4.1.0 was found, but == 3.1.2 is required by ‘phemd’
Zusätzlich: Warnmeldungen:
1: Paket ‘monocle’ wurde unter R Version 4.1.1 erstellt
2: Paket ‘Matrix’ wurde unter R Version 4.1.2 erstellt
3: Paket ‘Biobase’ wurde unter R Version 4.1.1 erstellt
4: Paket ‘BiocGenerics’ wurde unter R Version 4.1.1 erstellt
5: Paket ‘VGAM’ wurde unter R Version 4.1.2 erstellt
Ausführung angehalten
ERROR: lazy loading failed for package ‘phemd’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/phemd’
Hey, I was trying to install the package (both from GitHub using devtools and via BioConductor) but kept getting an error message.
I also tried installing it using the instructions in the readme description, but I got the error:
Also, the link to the Html vignette is broken. Is it referring to this one? https://bioconductor.riken.jp/packages/3.10/bioc/vignettes/phemd/inst/doc/phemd.html
(the installation instructions in there also don't work)