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KrishnaswamyLab / scprep

A collection of scripts and tools for loading, processing, and handling single cell data.
MIT License
72 stars 21 forks source link

Load from Loom file #117

Closed keenangraham closed 1 year ago

keenangraham commented 3 years ago

While browsing HCA for .mtx data to load into scprep I noticed this deprecation warning:

DCP 1.0 Matrix Deprecation Notice: The DCP is reprocessing DCP 1.0 data and will deprecate all DCP 1.0 matrices (MTX, CSV, and Loom files) once reprocessing is complete. All reprocessed and newly processed projects in the DCP 2.0 will have matrices in Loom format only.

https://data.humancellatlas.org/guides

Are there any plans to add ability to load from Loom files, or is it currently possible through the load_10X_HDF5 interface?

Thanks!