Describe the bugtest_install_github fails, preventing all PRs from passing
To Reproduce
cd scprep
pytest -v
Expected behavior
Passes.
Actual behavior
Fails.
```
======================================================================
ERROR: test_run.test_install_github_dependencies_None
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 58, in test_install_github_dependencies_None
scprep.run.install_github("twitter/AnomalyDetection", verbose=False)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
======================================================================
ERROR: test_run.test_install_github_dependencies_True
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 76, in test_install_github_dependencies_True
"twitter/AnomalyDetection", verbose=False, dependencies=True
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
======================================================================
ERROR: test_run.test_install_github_lib
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 47, in test_install_github_lib
scprep.run.install_github("twitter/AnomalyDetection", verbose=False)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
```
Describe the bug
test_install_github
fails, preventing all PRs from passingTo Reproduce
Expected behavior Passes.
Actual behavior Fails.
scprep version
master